FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53038616
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGAA89200.017.48281
CGGACAC99100.017.01341
GTGGAGA120350.016.9264641
TACCGGG150600.016.6031061
TGCGGAG83950.016.5881423
AGTGCGG105400.016.413592
AAACGAA141800.016.3684021
CGGAACC90500.016.1980081
CCCGGAA77550.016.1781561
GGGCTAC101250.016.1086481
ACGCACG111600.015.876971
AGGATAG95800.015.8452233
AACCTGA117750.015.8047871
GCGGAAA79150.015.79551
AGAAAAG69200.015.7526043
TAACGAC94000.015.6768461
GGAGGAT163500.015.5960351
GCACGAG108150.015.5512663
CTGGACG69850.015.3461161
GTAGAAA159650.015.25521851
Produced by FastQC (version 0.11.5)