FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58253419
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGGA358750.018.485195
CCCGGAA152250.018.19391
GGCACGT189850.018.1903971
AAGAGCC157450.018.1845287
TAAGAGC152850.018.0553426
ACGTTAG401900.017.9762653
TTAGGAG310350.017.9655726
CACGTTA320550.017.8795722
CTGGCAG209350.017.6840971
CCACGTT395300.017.550491
AGGGAAG128450.017.5123143
GCCCGAA108100.017.4190371
ATACCGA138800.017.2611121
TAGGAGT327400.017.1710857
GTAAGAG170500.017.1604145
AATGCGG125450.017.00999510
CGTTAGG383400.016.8778554
GAGTCTG334850.016.8154310
TACGCGG104150.016.79233210
AGAAGGG126450.016.7883878
Produced by FastQC (version 0.11.5)