FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68848961
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGGA413850.018.4958845
GGCACGT231550.018.307691
TAAGAGC181250.018.1877926
AAGAGCC189150.018.0620217
TTAGGAG355250.017.9675876
CCCGGAA175100.017.931131
CACGTTA370600.017.911342
CTGGCAG253700.017.871821
ACGTTAG465250.017.855013
CCACGTT452950.017.573581
AGGGAAG152150.017.488333
AGAAGGG148550.017.4080948
GTAAGAG202000.017.370435
TAGGAGT371550.017.3125617
AATGCGG143150.017.29642510
GCCCGAA124800.017.213031
TGATAGC181350.017.1284624
ATACCGA155450.017.033231
TTGCCTG318500.017.003411
CGTTAGG441800.016.9722254
Produced by FastQC (version 0.11.5)