FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51915950
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGGA319850.018.4601885
TAAGAGC139150.018.1334386
CCCGGAA138000.018.0875051
TTAGGAG278300.018.0583446
GGCACGT171750.018.0383321
CTGGCAG194900.018.0246051
ACGTTAG357250.017.9751573
CACGTTA288400.017.9655462
CCACGTT348100.017.894811
AAGAGCC145550.017.8046177
GCCCGAA92500.017.5376131
AATGCGG108750.017.33613810
AGGGAAG115750.017.2954243
TAGGAGT292650.017.2780827
GTAAGAG156350.017.1657145
AGAAGGG115550.017.0488538
ATACCGA120200.017.0028671
CGTTAGG342050.016.9630074
GAGTCTG301350.016.95451410
GATAGCA197250.016.9522175
Produced by FastQC (version 0.11.5)