FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49247389
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTGA96250.017.8247281
CAAACGG142850.017.61769710
CCCGAAG127250.017.4864221
GGGATCC111150.017.3560141
GCCCGAA82750.017.3282221
ACATGCA172400.017.3113121
AAACGCT131000.017.2714731
GTCCGGA109500.017.2576648
CCGCGGA63850.017.2443399
CAACGGC141550.017.119261
CCGGATC106800.017.09661710
ACGCTAG137050.016.8950233
ACGAGAC77800.016.8527035
TGGCGAG57850.016.8467463
TAAGCGA65150.016.7820456
CAGCGGG74300.016.713917
ACGGCCA131050.016.7116743
CGCTAGG130900.016.6210924
GGGACCT109600.016.6174741
AGGGCTC233750.016.5858821
Produced by FastQC (version 0.11.5)