FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46319153
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTGA95200.017.9756491
CAAACGG130900.017.82268510
ACATGCA161750.017.4447541
GCCCGAA82050.017.4095381
GTCCGGA102500.017.34168
CCCGAAG121200.017.3247451
CCGCGGA60050.017.2548059
CAACGGC135800.017.1639521
ACGCTAG123000.017.05423
CCGGATC101200.017.02093510
GGGATCC105600.016.9973491
AAACGCT118200.016.9544471
AGGGCTC220500.016.949241
ACGAGAC71850.016.9316965
TGGCGAG54850.016.8657283
GCTAGGG86500.016.8489135
GGGACCT100350.016.8447651
TACGGAG72850.016.8049710
GGCGAGC40600.016.7159584
CAGCGGG72950.016.6311347
Produced by FastQC (version 0.11.5)