FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46373970
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTGA92100.017.888481
CAAACGG133950.017.8602310
GTCCGGA105100.017.624228
ACATGCA161050.017.596561
AAACGCT121000.017.3996641
GGGATCC103150.017.3271871
GCCCGAA83600.017.3113421
CAACGGC140000.017.2000831
TGGCGAG54650.017.1889343
ACGAGAC73850.017.1433535
CCGGATC103850.017.13730610
CCCGAAG119850.017.0799331
ACGCTAG127650.017.001513
AGGGCTC222350.016.9475881
ACGGCCA130950.016.9174633
CAGCGGG69650.016.8663317
CCGCGGA60000.016.8474739
GAAACCT163200.016.7173581
GGGACCT101450.016.7171341
GATGTAG142250.016.7025493
Produced by FastQC (version 0.11.5)