FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38538280
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTGA77100.018.4139371
CAAACGG114550.017.898710
ACATGCA136850.017.6683731
AAACGCT102350.017.2045571
CCGCGGA49050.017.1999449
GTCCGGA89450.017.1785378
CCGGATC86550.017.13142610
GGGATCC88150.017.1294381
CCCGAAG95550.017.0698171
CAACGGC111250.017.0647681
GCCCGAA65800.016.9933551
ACGCTAG106750.016.9812243
ACGAGAC60700.016.9612265
AGAGAAC91900.016.9599448
ACGGCCA103100.016.9529363
TACGGAG63250.016.74697710
CAGCGGG60150.016.6957247
TGGCGAG44600.016.6721463
GGGACCT82800.016.667811
AGGGCTC183200.016.6524851
Produced by FastQC (version 0.11.5)