FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67399300
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGAA125550.017.4233151
GGGCTAC126550.016.7111871
GCGGAAA103100.016.4524381
TGGGAAG168900.016.3816721
TAGCGAC77250.016.358927
GCAGACC106200.016.2181137
CGGAACC106100.016.2052521
CCCGGAA103700.016.102331
ATCGGCG119850.016.0462821
CTGGACG100300.015.7476771
AAGAGAC91150.015.3488015
GTGCCCA132750.015.2694678
GGGATCC119850.015.2559161
CGTGGCC125700.015.250897
GAAGGGT132600.015.17620851
GGGACCT122750.015.1018741
GTGGAAC92750.015.0955028
AGACAGG159600.015.0587921
AACGGGA94000.015.0571751
TTGGATG147350.014.9278141
Produced by FastQC (version 0.11.5)