FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004838786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67399300
Sequences flagged as poor quality0
Sequence length94
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC1152010.1709231401513072Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG1136080.16855961412062143Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG678350.10064644588296912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)