FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39799237
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGAA75900.017.675781
GGGCTAC88800.016.5828741
CCCGGAA62450.016.5129171
CCGGACA70150.016.222191
AAACGAA83500.015.9351621
CGAAAAG59450.015.8567313
CTGGACG56750.015.5921791
GCGGAAA55050.015.5338951
TACCGAA84150.015.2627721
GAAGGGT89850.015.1886881
GGAGGAT79600.015.1811931
TCGCCGA60000.015.1791888
AGCTCGA66450.015.0797048
GTGGAAC60950.015.0328298
TAACGAC80600.014.9928411
CAATTGC103500.014.9740768
AAACGCT76550.014.851551
AACAACC125750.014.8346861
AGGGAAG54500.014.8345893
GAAACCT92150.014.630441
Produced by FastQC (version 0.11.5)