FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004838841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004838841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45476106
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGAA90550.017.8533381
GGGCTAC99550.016.8804441
CCCGGAA72000.016.6601941
CCGGACA79550.016.324051
AAACGAA93150.016.2208561
CTGGACG61950.016.129861
CGAAAAG72000.015.9650123
GTGGAAC71550.015.7574648
GAAGGGT96850.015.6579781
AGGGAAG59000.015.3997453
GCGGAAA65100.015.3662881
TCGCCGA63850.015.245958
AACAACC141600.015.2172261
ATCGGCG64850.015.0521911
TACCGAA94350.014.976461
AGCTCGA74250.014.9326268
AAACGCT83500.014.8664991
TTCACGC135800.014.8379751
GAAACCT102700.014.7874981
CAATTGC119250.014.7305388
Produced by FastQC (version 0.11.5)