FastQCFastQC Report
Wed 14 Sep 2022
EGAF00004842275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004842275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42329027
Sequences flagged as poor quality0
Sequence length35-43
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2162160.5107984173602668No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCT672800.15894530247529667No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN439510.10383182207330209No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC424280.10023381827321473No Hit
GGGCCAGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCT423520.10005427244996679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)