EGAF00004842278 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004842278
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29843300
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACGCCTCGCGGCGCCCATCTCCGCC	144931	0.48563999289622795	No Hit
GAACCCGACTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGGAACGGCGCTCGCCCATC	125422	0.4202685359863018	No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTT	101438	0.3399020885759953	No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGA	44426	0.148864234183217	No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGA	38673	0.12958687544608002	No Hit
CTCCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACGCCTCGCGGCGCCCATCTCCG	37505	0.1256730991545841	No Hit
CGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATT	36147	0.12112266404854691	No Hit
TAGGCAAAATACCAGCTGATGAAGGCATCTGATGCCTTCATCTGTTCAGTCATCTCCAAAAACAGTAAAAATAAC	33707	0.11294662453549037	No Hit
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGA	30810	0.10323925303166875	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCGACA	16570	46.39146	4
ACGGCGC	20965	45.713543	60
GCGACAT	16870	45.57845	5
AACGGCG	21155	45.221664	59
TCGATCG	21290	44.94645	16
CGCTCGC	21645	44.005787	64
TCGGCCG	22720	42.483044	20
CCTTCGG	22630	42.366413	52
CGGAACG	22630	42.26005	56
TCTCCGC	25995	42.21557	68
CCCTTCG	22820	41.998055	51
TTCGATC	22880	41.89837	15
GGCGCTC	23075	41.563354	62
TTCGGAA	23070	41.528683	54
ATCGGCC	23455	41.135956	19
CTCGCCC	23310	41.025314	66
CCGTCCC	23480	40.814457	47
GAACGGC	23580	40.73242	58
CGGCCGA	23865	40.473694	21
TCGGAAC	23945	40.110115	55