FastQCFastQC Report
Sat 11 May 2024
EGAF00004842305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004842305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39468070
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length35-43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCT773760.19604708312314234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG770060.19510961645704997No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC584130.14800064963906265No Hit
GGGCCAGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCT509540.12910182838937906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)