FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004842333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004842333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57001936
Sequences flagged as poor quality0
Sequence length35-86
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1883940.3305045639151625No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC982460.17235554946765316No Hit
TGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGA622670.10923664066427499No Hit
CCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTCTTCGAAA575760.10100709561864706No Hit
GAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTAT572530.10044044819811032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)