FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004842335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004842335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58189847
Sequences flagged as poor quality0
Sequence length35-86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1257040.21602393970893236No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1187060.20399778676166652No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC941580.16181173323930548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)