FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004842511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004842511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19321402
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGTAT24300.016.56376510
CGTATGG24300.015.98763512
CCGTATG26000.015.61536611
TACCGTA27250.015.54126559
GTACGCA30850.014.74846150
CTACCGT29250.014.1197888
ACGCACG33450.013.18349952
AGTACGC34900.013.13738449
TACGCAC36550.012.83139151
CCGGTAC35200.012.52751960
CGGTACA34800.012.47024961
GTCTAAC27250.012.334571
CGACCGT16550.012.0585791
CGACCTA14000.012.0005764
GCCGGTA37100.011.88594859
TCGCACG26700.011.66689527
GCGATAG29400.010.95146266
GCGCTAA29300.010.87071742
CGCACGA29000.010.86230928
GACCGTT19650.010.6896382
Produced by FastQC (version 0.11.5)