FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004850988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004850988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21933279
Sequences flagged as poor quality0
Sequence length150
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC698900.3186482057698714No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT463600.21136830475735072No Hit
ATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTT461390.21036070347712257No Hit
CGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCGTG444900.2028424477708053No Hit
CTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTTGATGATGA359150.16374660624159296No Hit
GTCCCACTCACCATGGAGAAGATCCTGATCCTCCTGCTTGTCGCCCTCTC321940.14678151862291086No Hit
GCGGCACCATGGCTTTCCTCTGGCTCCTCTCCTGCTGGGCCCTCCTGGGT267240.12184224711681278No Hit
CAGCTGTCCCACTCACCATGGAGAAGATCCTGATCCTCCTGCTTGTCGCC264930.1207890530184748No Hit
CATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTGTTGCTGCCC253400.11553220109040696No Hit
CCGGTTTTGTCCTGCAGGGACACCTGCCAGGGCCAGGAGCCGGGGACGGC246390.11233614454090517No Hit
CCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTTGA238190.10859753345589594No Hit
GGGACTTGTAGCAGTGGCCTGCTGATACCACCCACTGTTCGTTGATGAGG237810.10842428074707845No Hit
GCCGGTTTTGTCCTGCAGGGACACCTGCCAGGGCCAGGAGCCGGGGACGG237020.10806409748401048No Hit
CCGGGAGATGCGCTGGAGCAGGGGAGAGATGCCCCTGCGCCTAGTGGCCT224710.10245162157468567No Hit
GTCGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCG220390.10048201183233935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)