FastQCFastQC Report
Wed 11 May 2022
EGAF00004851008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004851008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21949013
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT479020.21824215968162214No Hit
CTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTTGATGATGA338530.15423472572548022No Hit
CGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCGTG296990.13530904555936069No Hit
CTGATCCTTACCTTTGTTGCAGCTGCTGTTGCTGCCCCCTTTGATGATGA289230.13177357906708606No Hit
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC226890.10337139077734384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)