FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004851016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004851016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20703121
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT846530.4088900412647929No Hit
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC622080.3004764354128056No Hit
GCCGGTTTTGTCCTGCAGGGACACCTGCCAGGGCCAGGAGCCGGGGACGG281480.13596017721192857No Hit
CGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCGTG281130.13579112057549197No Hit
GTCGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCG264950.12797587378250844No Hit
ATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTT256850.1240634201964042No Hit
GCGCCATCGATGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGGAT248740.1201461364206875No Hit
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCA234950.11348530494508532No Hit
CATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTGTTGCTGCCC225910.1091188135354085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)