FastQCFastQC Report
Wed 11 May 2022
EGAF00004851028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004851028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24986983
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC985210.39428929855197004No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT844800.338096039846027No Hit
GCCGGTTTTGTCCTGCAGGGACACCTGCCAGGGCCAGGAGCCGGGGACGG400390.16023943346821823No Hit
GCGCCATCGATGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGGAT321400.1286269734925581No Hit
GTCGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCG314820.125993602348871No Hit
CATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTGTTGCTGCCC305450.12224364982359015No Hit
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCA297780.11917405154515855No Hit
GCGGGACTTGTAGCAGTGGCCTGCTGATACCACCCACTGTTCGTTGATGA273810.10958105666458412No Hit
CGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCGTG255180.10212517453587733No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)