FastQCFastQC Report
Wed 11 May 2022
EGAF00004851037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004851037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29599999
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC1319550.44579393397952477No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT831130.28078717164821526No Hit
GACGGAACTGCCACGATGCTGCCACTTTGGACTCTTTCACTGCTGCTGGG564800.1908108172571222No Hit
CGGAACTGCCACGATGCTGCCACTTTGGACTCTTTCACTGCTGCTGGGAG398940.1347770315803051No Hit
ATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTT393850.1330574369276161No Hit
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCA363530.12281419333831733No Hit
GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCT328480.11097297672206002No Hit
GTCGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCG327380.11060135508788362No Hit
CATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTGTTGCTGCCC325650.1100168956086789No Hit
GCCGGTTTTGTCCTGCAGGGACACCTGCCAGGGCCAGGAGCCGGGGACGG310570.10492230084196963No Hit
CGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCGTG301670.10191554398363324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)