Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004851282 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 47401042 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT | 169809 | 0.35823896023214 | No Hit |
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG | 63764 | 0.13452024957594813 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAACGAT | 31080 | 0.0 | 26.41573 | 45 |
ACCGCGT | 33575 | 0.0 | 24.806625 | 6 |
AGACCGC | 33750 | 0.0 | 24.657896 | 4 |
CAGACCG | 34985 | 0.0 | 23.851757 | 3 |
CCGCGTT | 34925 | 0.0 | 23.821976 | 7 |
GACCGCG | 34950 | 0.0 | 23.791935 | 5 |
CGCGTTC | 35605 | 0.0 | 23.3544 | 8 |
AGAACGA | 36830 | 0.0 | 22.383219 | 44 |
TCAGACC | 38610 | 0.0 | 22.055227 | 2 |
GCGTTCT | 39420 | 0.0 | 21.162756 | 9 |
AATACGG | 39560 | 0.0 | 20.664793 | 32 |
TACGGAG | 39585 | 0.0 | 20.577887 | 34 |
ATACGGA | 39875 | 0.0 | 20.518805 | 33 |
CTCAGAC | 44865 | 0.0 | 20.009462 | 1 |
CAATACG | 42360 | 0.0 | 19.495625 | 31 |
AAGAACG | 42980 | 0.0 | 19.23846 | 43 |
ACGGAGA | 42605 | 0.0 | 19.197887 | 35 |
CGTTCTC | 45690 | 0.0 | 18.53436 | 10 |
CGGAGAG | 44240 | 0.0 | 18.458021 | 36 |
CCCAATA | 45395 | 0.0 | 18.31631 | 29 |