EGAF00004851669 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004851669
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43935118
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA	99529	0.22653632112698546	No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG	98362	0.2238801316067935	No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG	95696	0.21781209282287578	No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG	49316	0.11224733708465287	No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT	48767	0.11099776720754455	No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTG	48510	0.11041281373137543	No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC	45088	0.10262405577242333	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCACTC	35570	16.645653	8
AGGTCAC	36740	16.426554	6
GGTCACT	36870	16.094522	7
GAGGTCA	38485	15.857073	5
ACTCTCC	37785	15.657991	11
GGGAGGT	40230	15.4931135	3
TGCCCGT	16530	15.068823	44
GGAGGTC	41040	14.901834	4
AGCTTAG	32495	14.6961355	45
TCACTCT	42110	14.220815	9
TGGGAGG	36130	13.999679	2
AGGGATC	18570	13.776482	2
CACTCTC	43620	13.599552	10
GGCATAG	35530	13.480268	35
ATAGGGG	36180	13.31282	38
CTGGGAG	43090	13.171656	1
TCTCCCC	45765	13.094807	13
GAGCTTA	36750	13.041477	44
TGGCATA	37605	12.790632	34
CATAGGG	38615	12.45549	37