FastQCFastQC Report
Tue 26 Apr 2022
EGAF00004851782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004851782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87372739
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG3268840.37412584719359665No Hit
GCCAGCTTCACGCTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTTC1983190.22698040861463664No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT1527120.17478220523680732No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCC1217850.13938558112502344No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT989300.11322753656606782No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTG899990.10300581283139126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)