FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004851788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004851788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56392497
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACCGC138350.018.6045744
ACCGCGT141250.018.2863226
GACCGCG142350.018.050185
TTCGACG27800.017.319766
CAGACCG157600.016.660483
CCGCGTT158200.016.32717
CGCGTTC139750.015.1982588
TCGACGA32600.015.1147227
CCCGTAT38950.014.6846621
GTCCGTT47450.014.6167961
CGGTATA45750.014.40951620
CTACACG76100.014.07327645
TCGGCGC65750.013.68790945
TTCGGCG65950.013.646399544
AACGCTA189750.013.58864323
CGCGTTT34900.013.5384068
ACGCTAC190700.013.53274924
CGTACGC66550.013.1514755
TCAGACC204400.013.055032
GTCCGAT31450.013.0313221
Produced by FastQC (version 0.11.5)