Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004851936 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 52366946 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT | 143505 | 0.2740373670062791 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAACGAT | 27380 | 0.0 | 25.873585 | 45 |
GACCGCG | 31095 | 0.0 | 22.950403 | 5 |
ACCGCGT | 31185 | 0.0 | 22.913015 | 6 |
AGACCGC | 31510 | 0.0 | 22.690964 | 4 |
CCGCGTT | 32195 | 0.0 | 22.166262 | 7 |
CGCGTTC | 32660 | 0.0 | 21.83001 | 8 |
AGAACGA | 32675 | 0.0 | 21.776354 | 44 |
CAGACCG | 33135 | 0.0 | 21.741062 | 3 |
TCAGACC | 36695 | 0.0 | 19.944422 | 2 |
AATACGG | 35710 | 0.0 | 19.792679 | 32 |
TTCGACG | 2175 | 0.0 | 19.647404 | 6 |
ATACGGA | 36055 | 0.0 | 19.617157 | 33 |
TACGGAG | 36170 | 0.0 | 19.547255 | 34 |
AAGAACG | 36670 | 0.0 | 19.360361 | 43 |
CAATACG | 37215 | 0.0 | 18.958685 | 31 |
GCGTTCT | 37770 | 0.0 | 18.92421 | 9 |
ACGGAGA | 40030 | 0.0 | 17.720402 | 35 |
CCCAATA | 41405 | 0.0 | 17.250797 | 29 |
CTCAGAC | 45965 | 0.0 | 17.21393 | 1 |
CGGAGAG | 42370 | 0.0 | 16.656239 | 36 |