Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004851960 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 52783379 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGCGT | 11805 | 0.0 | 20.521805 | 6 |
GACCGCG | 12615 | 0.0 | 19.239922 | 5 |
CCGCGTT | 12645 | 0.0 | 19.158535 | 7 |
AGACCGC | 12845 | 0.0 | 19.088047 | 4 |
GAACGAT | 13175 | 0.0 | 18.616343 | 45 |
CGCGTTC | 13485 | 0.0 | 17.99833 | 8 |
CAGACCG | 13965 | 0.0 | 17.653471 | 3 |
AATACGG | 15315 | 0.0 | 15.806644 | 32 |
CCCGTAT | 3650 | 0.0 | 15.776656 | 1 |
ACGTTCG | 2485 | 0.0 | 15.478737 | 6 |
TACGGAG | 15730 | 0.0 | 15.389402 | 34 |
ATACGGA | 15930 | 0.0 | 15.1822405 | 33 |
AGAACGA | 16115 | 0.0 | 15.136578 | 44 |
TCAGACC | 17355 | 0.0 | 14.853104 | 2 |
TTCGACG | 1525 | 0.0 | 14.16013 | 6 |
TCGGCGC | 6675 | 0.0 | 14.158475 | 45 |
TTCGGCG | 6745 | 0.0 | 14.111955 | 44 |
CAATACG | 18295 | 0.0 | 13.391852 | 31 |
AAGAACG | 18265 | 0.0 | 13.345015 | 43 |
GTCCGTT | 4315 | 0.0 | 13.084611 | 1 |