FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51847042
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGTCG31200.015.073297526
ATAGGGG170200.014.40444838
AGCTTAG173250.014.08497245
GGCATAG173000.014.04327835
GGGAGGT282350.013.8836413
GGAGGTC277250.013.6341994
GAGCTTA195300.012.46041544
TGGCATA202450.012.11251534
CATAGGG207400.011.79914937
ACTCTCC316650.011.73299411
ATATAGC50300.011.457326
GGTCACT325100.011.3267597
GTCACTC333800.011.2270278
TGTCGTT43150.011.05578628
GCATAGG223900.010.98072336
TAGGGGA335300.010.8200439
GTCGTTC45200.010.75348129
GCGTAGG113950.010.42280236
GGCGTAG114450.010.39754335
CGTAGGG114150.010.38401337
Produced by FastQC (version 0.11.5)