FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46659790
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGCTA121450.021.20721623
ACGCTAC121700.021.14516824
AGACCGC144450.020.789484
ACCGCGT145800.020.6432046
GACCGCG150200.020.0685145
CGCTACC127950.020.05954425
CAGACCG155150.019.689193
CCGCGTT165700.018.1503547
AAAACGC144600.017.95201521
CGCGTTC170900.017.5717648
GAAAACG155850.016.74275420
TTCGACG14700.016.3736296
AAACGCT161500.016.07344622
TCAGACC193500.016.0078962
ATACGGG118250.014.68577933
CCCGTAT28550.014.6599941
GCGTTCT213150.014.1942719
TACGGGG123900.014.17948834
GTCCGTT33250.013.8736011
CGTGGTT190900.013.8220841
Produced by FastQC (version 0.11.5)