FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57054138
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCCGGC120200.015.9269235
CGGACAC132850.014.29147213
ACGGACA134850.014.13063718
CACCCGG147550.013.5262384
CCGGACA142200.013.48707712
TCACCCG153050.013.1014763
CGGACAG145050.012.99828619
ATAGCTC141800.012.93171339
GACACGG149700.012.877768515
CACGGAC149900.012.75671817
CGGCCCG158850.012.4981828
TAGCTCT151600.012.22924540
ACACGGA157400.012.16262816
GCCCGGA168950.011.6155810
TGATAGC168850.011.30037237
TAGCGTA13900.011.16946237
GGACACG174250.011.10239914
GATAGCT170750.010.98980438
TTGATAG181300.010.56277936
CCCGGAC194300.010.42569711
Produced by FastQC (version 0.11.5)