FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47900188
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCCGGC76050.014.408195
GGCATAG104200.013.53829835
ACGGACA84200.012.90505618
TCACCCG89950.012.7834463
AGCTTAG111350.012.7689845
ATAGGGG121300.012.15053838
CATAGGG118400.011.838593537
CCGGACA91550.011.7714912
CGGACAC94900.011.45078413
CACCCGG96800.011.3666184
GCATAGG123850.011.28122436
TGGCATA129900.011.08497234
ACACGGA98350.011.07100916
CGGCCCG103150.010.9058188
GAGCTTA131700.010.72929644
CACGGAC105300.010.48985117
GGGAGGT227500.010.43516353
GGAGGTC193200.010.307044
ATAGCTC102000.010.21390339
GTTGTCG21500.010.1499326
Produced by FastQC (version 0.11.5)