FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53583405
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC70450.018.96526143
TCGTGTA70050.018.95276614
GCGTCGT73450.018.58359511
GTCGTGT77000.017.7043313
GTAGGGA81800.016.23094218
TCTCGGT86100.016.23022336
AGTGTAG89200.015.87355228
TGTAGGG87000.015.80399717
GTAGATC94250.014.71254231
TCACCCG110550.014.5918243
CGTCGTG96450.014.12910312
ACCCGGC113550.013.9465155
ATCTCGG107000.013.64979735
GTCGCCG107200.013.55406644
TGGTCGC138550.013.18463842
ACGGACA124550.013.09903318
CGGACAC118850.013.0601313
CACCCGG121350.013.0148264
GTGTAGG106900.012.98830316
TCGGTGG108250.012.88729238
Produced by FastQC (version 0.11.5)