FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51521489
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGACG19350.019.6491816
ATGCGCG23550.016.62819344
AACGCTA101150.016.61559123
AGACCGC53500.016.527354
ACGCTAC102600.016.33691424
CCCGTAT32100.016.1284331
TTCGGCG75300.015.72090344
CGCTACC108000.015.60368525
GACCGCG54900.015.5729265
GTCCGTT36700.015.02691
ACCGCGT57900.014.9984896
CAGACCG60950.014.9135333
TCGACGA25100.014.8787487
TGCGCGT27700.014.218225545
TCGGCGC84400.014.0258945
CGAACGA48650.013.78225332
AAAACGC123600.013.74313421
CCGTACG87300.013.7365434
CGACGAG26100.013.6191058
CCCGGAT117750.013.5918331
Produced by FastQC (version 0.11.5)