FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32464625
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC1017639331.346097483029606No Hit
AAGACGGA916139428.21962058702357No Hit
GTCCTTCT664217320.459725008374498No Hit
TCTTAAAG565761317.42700862862269No Hit
NGAGGCTC797110.24553186737872376No Hit
NAGACGGA714740.22015963529534072No Hit
NTCCTTCT516930.15922869892998917No Hit
NCTTAAAG444180.13681969220343682No Hit
GTTCTTCT398720.12281675824070046No Hit
CGAAGCTC373790.11513763057481798No Hit
GACCTTCT368250.11343115776017741No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)