FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences261177416
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCCGT8752251933.51075308900368No Hit
CAGAGGCC7856644230.081636920705275No Hit
GGTCAATA6070150223.241481951104074No Hit
ATCTTTAG3047332111.667670760629626No Hit
ATCTGTAG10896670.4172133321052537No Hit
TCAGCCGA2837570.10864530492177012No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)