FastQCFastQC Report
Wed 11 May 2022
EGAF00004852250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295259214
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC9245640331.313638530515085No Hit
GGCAATGG7823519826.49712330399958No Hit
ACATTACT6600269022.354150817457636No Hit
TTTGGGTA5489423518.591878727957326No Hit
GGCAATGA4470750.1514177979217949No Hit
ACATTACA3206740.10860761825370163No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)