FastQCFastQC Report
Sun 5 Jun 2022
EGAF00004852251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences290579496
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC8404309228.922581653868658No Hit
AGGTATTG6848664723.568988157375014No Hit
GATGCCAA6827477723.496075235810856No Hit
CTCCTAGT6623147522.792893480687983No Hit
AGGTATTA3761960.12946405550927104No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)