FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157883076
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTATGT4246452926.89618803727893No Hit
AAACCGAG4209908526.66472307646198No Hit
GCTGTCCA3849557824.382333417420877No Hit
TTGAGATC3142923619.906652946133377No Hit
AACCCGAG9987960.6326175200690921No Hit
TGGAGATC3417680.21646905333919386No Hit
GTGAGATC2902810.18385821162997862No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)