FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195421321
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT5740744229.37624293308303No Hit
GTACGCGG5557149928.436763560717104No Hit
CCTTTGTC4426922422.65322113957054No Hit
TAGGATAA3615074218.4988730067995No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)