FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74072245
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCGC2437524932.90739871594279No Hit
GGCTAGCG2138249428.8670797003655No Hit
TCTCGTTT1632208322.03535615803193No Hit
CAAGTAAA1046088914.122548871038No Hit
TCTCGTTA2392770.3230319264658442No Hit
CAAATAAA1160980.15673617020788286No Hit
ATGACCGA805160.10869928405707159No Hit
CAAGAAAA762950.10300079334708973No Hit
ATGAACGC749460.10117959837723292No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)