FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77576645
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC2405334731.005912926499978No Hit
TGATGCAT2113587227.24514833040279No Hit
ATGGAATG1621359020.900091773754845No Hit
GCTACTGA1477687219.048093662725424No Hit
ATGGACTG1633550.2105723958544482No Hit
CACCTGCA1445020.1862699785483118No Hit
GTTACTGA940750.12126716745742226No Hit
ATGGAATA819130.10558976867329078No Hit
GCTACCGA811080.10455208523132188No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)