FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117840077
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGTTG3544107430.07556928191756No Hit
CCGATAGC3077565826.116461210391094No Hit
ATACCCAA2713845023.029898393566054No Hit
TATGAGCT2205549918.71646689436566No Hit
ATACCAAA2555740.2168820714535005No Hit
GATGAGCT1696650.14397903015626848No Hit
GGCTGTTA1514850.12855134166281987No Hit
GGCTGGTG1427740.12115911974497437No Hit
GGCGGTTG1247430.1058578738029847No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)