FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44105629
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA1429591432.41290131017064No Hit
ACAGAGGT1138018725.802119271442653No Hit
GTCCTAAC1002997522.74080480747707No Hit
TATAGTTG788629017.880461471255742No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)