FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112624223
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTTAT3388399230.08588303423856No Hit
TAGACACC3195996928.377526742182273No Hit
CCACAGGG2382283021.15249221297624No Hit
ATTTGCTA2124672518.865146798837404No Hit
CCACAGGA2520370.22378578363199897No Hit
TAGACACA1938240.17209796865812782No Hit
GGCGGTAT1861730.16530458105801982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)