FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004852499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1553198
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTCATCTTGTTTGTGTGATTCGCTTTCTTATATGGGGGCCATAATAA17860.11498855908905369No Hit
CTCTACGGTTTGTTTCACCGTACTCCTTTCTTATATGGGACCCTTGCTCC16630.10706941420218156No Hit
CATCGAACATACCATGGTCCGCACGCTTTCTTATATGGGACGTTCAAATG16360.10533106532457548No Hit
CATCAAGTCTGTCTATATGCCAAACCTTTCTTATATGGGGAATCGTTTCT16260.10468723240694361No Hit
ATCATCTTCCTAAGTGCGCTATTCTGTTTCTTATATGGGATAAGCAAGAT15890.10230505061170567No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)