FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19512355
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG1275900.6538933921610179No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC997100.5110095629153938No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA699490.35848568765789673No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGA454620.2329908409312971No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC416240.21332125209899058No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGA382410.19598351916003987No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC374400.19187842779613223No Hit
GACCTGGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTT333510.17092247450397452No Hit
AAACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTC316210.16205629715121522No Hit
TTGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCACC270990.138881237041864No Hit
ATGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTG251030.12865182085914284No Hit
TGCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTG211280.10828011277982591No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG208760.10698862336196732No Hit
TTTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGA204690.10490276545296556No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)