FastQCFastQC Report
Wed 11 May 2022
EGAF00004852520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20484318
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG814230.39748943557701066No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC670670.3274065555904766No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA296240.14461794627480395No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGA284810.13903806804795746No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGA262470.128132164321995No Hit
GCTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCT249010.12156128410035422No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC238250.1163084853496221No Hit
AAACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTC226060.11035759159763092No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)