FastQCFastQC Report
Fri 1 Jul 2022
EGAF00004852523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23469896
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG1410080.6008036848565499No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC985270.41980160457464316No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC874580.3726390606928978No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA641050.27313712851560995No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC616160.2625320538275926No Hit
AAACGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTC513390.2187440455637298No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGA502190.21397197499298679No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGA456690.1945854382993431No Hit
GCTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCT327660.139608628858006No Hit
GACCTGGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTT289130.12319185393919088No Hit
TTGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCACC284900.12138954514327631No Hit
AACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAG267050.11378405767115457No Hit
AGTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCT251590.10719689597261103No Hit
AGTTGGTTGATTGTAGATATTGGGCTGTTAATTGTCAGTTCAGTGTTTTA250430.10670264580635552No Hit
TTTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGA244550.10419730875671541No Hit
TGCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTG236250.1006608636016112No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)